| Title: | quantwiz: a parallel software package for lc-ms-based label-free protein quantification |
| Author: | Wang Jing
; Zhang Yunquan
; Zhang Xianyi
; Sun Xiangzheng
; Hu Zelin
; Li Sujun
; Zeng Rong
|
| Source: | 2009 11th IEEE International Conference on High Performance Computing and Communications, HPCC 2009
|
| Conference Name: | 11th IEEE International Conference on High Performance Computing and Communications
|
| Conference Date: | JUN 25-27,
|
| Issued Date: | 2009
|
| Conference Place: | Seoul, SOUTH KOREA
|
| Keyword: | protein quantification
; mass spectrometry
; label-free
; abundance ratio
; parallelization
|
| Publisher: | HPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS
|
| Publish Place: | 345 E 47TH ST, NEW YORK, NY 10017 USA
|
| ISBN: | 978-1-4244-4600-1
|
| Department: | Wang, Jing; Zhang, Yunquan; Zhang, Xianyi; Sun, Xiangzheng; Hu, Zelin Chinese Acad Sci, Lab Parallel Comp, Inst Software, Beijing 100864, Peoples R China.
|
| Sponsorship: | IEEE Comp Soc, IEEE
|
| English Abstract: | Nowadays Proteomics becomes more and more popular in life science. Protein quantification, especially based on mass spectrometry (short for MS) method, is perceived as an essential part of research on proteomics. There have been some algorithms and software for protein quantification based on MS. But they have difficulties on portability, applicability and longtime running. To solve these problems, we developed a new domestic parallel software package called QuaniWiz for high performance Liquid Chromatography (short for LC)-MS-based label-free protein quantification. In this paper, we described the framework design and prototype development of this high performance software package firstly. Also, user interface developed for the visualization of QuantWiz is introduced Finally, we showed implementation of the parallelization version and performance of some experiments on this software package. |
| Content Type: | 会议论文
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| URI: | http://ir.iscas.ac.cn/handle/311060/8290
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| Appears in Collections: | 并行计算实验室 _会议论文
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| Recommended Citation: | |
Wang Jing,Zhang Yunquan,Zhang Xianyi,et al. quantwiz: a parallel software package for lc-ms-based label-free protein quantification[C]. 见:11th IEEE International Conference on High Performance Computing and Communications. Seoul, SOUTH KOREA. JUN 25-27,.
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