| 题名: | quantwiz: a parallel software package for lc-ms-based label-free protein quantification |
| 作者: | Wang Jing
; Zhang Yunquan
; Zhang Xianyi
; Sun Xiangzheng
; Hu Zelin
; Li Sujun
; Zeng Rong
|
| 会议文集: | 2009 11th IEEE International Conference on High Performance Computing and Communications, HPCC 2009
|
| 会议名称: | 11th IEEE International Conference on High Performance Computing and Communications
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| 会议日期: | JUN 25-27,
|
| 出版日期: | 2009
|
| 会议地点: | Seoul, SOUTH KOREA
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| 关键词: | protein quantification
; mass spectrometry
; label-free
; abundance ratio
; parallelization
|
| 出版者: | HPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS
|
| 出版地: | 345 E 47TH ST, NEW YORK, NY 10017 USA
|
| ISBN: | 978-1-4244-4600-1
|
| 部门归属: | Wang, Jing; Zhang, Yunquan; Zhang, Xianyi; Sun, Xiangzheng; Hu, Zelin Chinese Acad Sci, Lab Parallel Comp, Inst Software, Beijing 100864, Peoples R China.
|
| 主办者: | IEEE Comp Soc, IEEE
|
| 英文摘要: | Nowadays Proteomics becomes more and more popular in life science. Protein quantification, especially based on mass spectrometry (short for MS) method, is perceived as an essential part of research on proteomics. There have been some algorithms and software for protein quantification based on MS. But they have difficulties on portability, applicability and longtime running. To solve these problems, we developed a new domestic parallel software package called QuaniWiz for high performance Liquid Chromatography (short for LC)-MS-based label-free protein quantification. In this paper, we described the framework design and prototype development of this high performance software package firstly. Also, user interface developed for the visualization of QuantWiz is introduced Finally, we showed implementation of the parallelization version and performance of some experiments on this software package. |
| 内容类型: | 会议论文
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| URI标识: | http://ir.iscas.ac.cn/handle/311060/8290
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| Appears in Collections: | 并行计算实验室 _会议论文
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| Recommended Citation: | |
Wang Jing,Zhang Yunquan,Zhang Xianyi,et al. quantwiz: a parallel software package for lc-ms-based label-free protein quantification[C]. 见:11th IEEE International Conference on High Performance Computing and Communications. Seoul, SOUTH KOREA. JUN 25-27,.
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