Institutional Repository
| Three-Dimensional Gene Map of Cancer Cell Types: Structural Entropy Minimisation Principle for Defining Tumour Subtypes | |
Li, AS; Yin, XC ; Pan, YC
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| 2016 | |
| Source | SCIENTIFIC REPORTS
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| ISSN | 2045-2322 |
| Volume | 6 |
| English Abstract | In this study, we propose a method for constructing cell sample networks from gene expression profiles, and a structural entropy minimisation principle for detecting natural structure of networks and for identifying cancer cell subtypes. Our method establishes a three-dimensional gene map of cancer cell types and subtypes. The identified subtypes are defined by a unique gene expression pattern, and a three-dimensional gene map is established by defining the unique gene expression pattern for each identified subtype for cancers, including acute leukaemia, lymphoma, multi-tissue, lung cancer and healthy tissue. Our three-dimensional gene map demonstrates that a true tumour type may be divided into subtypes, each defined by a unique gene expression pattern. Clinical data analyses demonstrate that most cell samples of an identified subtype share similar survival times, survival indicators and International Prognostic Index (IPI) scores and indicate that distinct subtypes identified by our algorithms exhibit different overall survival times, survival ratios and IPI scores. Our three-dimensional gene map establishes a high-definition, one-to-one map between the biologically and medically meaningful tumour subtypes and the gene expression patterns, and identifies remarkable cells that form singleton submodules.; In this study, we propose a method for constructing cell sample networks from gene expression profiles, and a structural entropy minimisation principle for detecting natural structure of networks and for identifying cancer cell subtypes. Our method establishes a three-dimensional gene map of cancer cell types and subtypes. The identified subtypes are defined by a unique gene expression pattern, and a three-dimensional gene map is established by defining the unique gene expression pattern for each identified subtype for cancers, including acute leukaemia, lymphoma, multi-tissue, lung cancer and healthy tissue. Our three-dimensional gene map demonstrates that a true tumour type may be divided into subtypes, each defined by a unique gene expression pattern. Clinical data analyses demonstrate that most cell samples of an identified subtype share similar survival times, survival indicators and International Prognostic Index (IPI) scores and indicate that distinct subtypes identified by our algorithms exhibit different overall survival times, survival ratios and IPI scores. Our three-dimensional gene map establishes a high-definition, one-to-one map between the biologically and medically meaningful tumour subtypes and the gene expression patterns, and identifies remarkable cells that form singleton submodules. |
| Indexed Type | SCI |
| Department | Chinese Acad Sci, Inst Software, State Key Lab Comp Sci, 4 South Fourth St, Beijing 100190, Peoples R China. Univ Chinese Acad Sci, Beijing, Peoples R China. |
| Language | 英语 |
| WOS ID | WOS:000369271900002 |
| Citation statistics | |
| Content Type | 期刊论文 |
| URI | http://ir.iscas.ac.cn/handle/311060/17407 |
| Collection | 中国科学院软件研究所 |
| Recommended Citation GB/T 7714 | Li, AS,Yin, XC,Pan, YC. Three-Dimensional Gene Map of Cancer Cell Types: Structural Entropy Minimisation Principle for Defining Tumour Subtypes[J]. SCIENTIFIC REPORTS,2016,6. |
| APA | Li, AS,Yin, XC,&Pan, YC.(2016).Three-Dimensional Gene Map of Cancer Cell Types: Structural Entropy Minimisation Principle for Defining Tumour Subtypes.SCIENTIFIC REPORTS,6. |
| MLA | Li, AS,et al."Three-Dimensional Gene Map of Cancer Cell Types: Structural Entropy Minimisation Principle for Defining Tumour Subtypes".SCIENTIFIC REPORTS 6(2016). |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| srep20412.pdf（6820KB） | 开放获取 | License | Application Full Text | |||
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