quantwiz: a parallel software package for lc-ms-based label-free     protein quantification

	quantwiz: a parallel software package for lc-ms-based label-free protein quantification
	Wang Jing; Zhang Yunquan; Zhang Xianyi; Sun Xiangzheng; Hu Zelin; Li Sujun; Zeng Rong
	2009
会议名称	11th IEEE International Conference on High Performance Computing and Communications
会议录名称	2009 11th IEEE International Conference on High Performance Computing and Communications, HPCC 2009
会议日期	JUN 25-27,
会议地点	Seoul, SOUTH KOREA
出版地	345 E 47TH ST, NEW YORK, NY 10017 USA
出版者	HPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS
ISBN	978-1-4244-4600-1
部门归属	Wang, Jing; Zhang, Yunquan; Zhang, Xianyi; Sun, Xiangzheng; Hu, Zelin Chinese Acad Sci, Lab Parallel Comp, Inst Software, Beijing 100864, Peoples R China.
摘要	Nowadays Proteomics becomes more and more popular in life science. Protein quantification, especially based on mass spectrometry (short for MS) method, is perceived as an essential part of research on proteomics. There have been some algorithms and software for protein quantification based on MS. But they have difficulties on portability, applicability and longtime running. To solve these problems, we developed a new domestic parallel software package called QuaniWiz for high performance Liquid Chromatography (short for LC)-MS-based label-free protein quantification. In this paper, we described the framework design and prototype development of this high performance software package firstly. Also, user interface developed for the visualization of QuantWiz is introduced Finally, we showed implementation of the parallelization version and performance of some experiments on this software package.
关键词	Protein Quantification Mass Spectrometry Label-free Abundance Ratio Parallelization
主办者	IEEE Comp Soc, IEEE
内容类型	会议论文
URI标识	http://ir.iscas.ac.cn/handle/311060/8290
专题	并行软件与计算科学实验室
推荐引用方式 GB/T 7714	Wang Jing,Zhang Yunquan,Zhang Xianyi,et al. quantwiz: a parallel software package for lc-ms-based label-free protein quantification[C]. 345 E 47TH ST, NEW YORK, NY 10017 USA:HPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS,2009.