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quantwiz: a parallel software package for lc-ms-based label-free protein quantification
Wang Jing; Zhang Yunquan; Zhang Xianyi; Sun Xiangzheng; Hu Zelin; Li Sujun; Zeng Rong
2009
Conference Name11th IEEE International Conference on High Performance Computing and Communications
Source2009 11th IEEE International Conference on High Performance Computing and Communications, HPCC 2009
Conference DateJUN 25-27,
Conference PlaceSeoul, SOUTH KOREA
Publish Place345 E 47TH ST, NEW YORK, NY 10017 USA
PublisherHPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS
ISBN978-1-4244-4600-1
DepartmentWang, Jing; Zhang, Yunquan; Zhang, Xianyi; Sun, Xiangzheng; Hu, Zelin Chinese Acad Sci, Lab Parallel Comp, Inst Software, Beijing 100864, Peoples R China.
English AbstractNowadays Proteomics becomes more and more popular in life science. Protein quantification, especially based on mass spectrometry (short for MS) method, is perceived as an essential part of research on proteomics. There have been some algorithms and software for protein quantification based on MS. But they have difficulties on portability, applicability and longtime running. To solve these problems, we developed a new domestic parallel software package called QuaniWiz for high performance Liquid Chromatography (short for LC)-MS-based label-free protein quantification. In this paper, we described the framework design and prototype development of this high performance software package firstly. Also, user interface developed for the visualization of QuantWiz is introduced Finally, we showed implementation of the parallelization version and performance of some experiments on this software package.
KeywordProtein Quantification Mass Spectrometry Label-free Abundance Ratio Parallelization
SponsorshipIEEE Comp Soc, IEEE
Content Type会议论文
URIhttp://ir.iscas.ac.cn/handle/311060/8290
Collection并行软件与计算科学实验室 
Recommended Citation
GB/T 7714
Wang Jing,Zhang Yunquan,Zhang Xianyi,et al. quantwiz: a parallel software package for lc-ms-based label-free protein quantification[C]. 345 E 47TH ST, NEW YORK, NY 10017 USA:HPCC: 2009 11TH IEEE INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS,2009.
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